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Queries on Target Stars
These queries return lists of target stars selected from the archive.
Note that they do not return lists of spectra of those stars:
a given star may be observed more than once. Nor do they return lists
of recommended (or other) physical parameters (effective temperature
etc.) and abundances. Subsequent sections give examples of
querying these quantities.
Aside on star names
The naming of stars, in catalogues and elsewhere, can be surprisingly
problematic, with the brighter stars, in particular, enjoying a variety
of designations. Some catalogue naming schemes derive a star's name
from its celestial coordinates, others do not; there are pros and
cons to both approaches.
In the Gaia-ESO Survey (GES) survey each star is assigned a name based
on its celestial coordinates. This name is formed by concatenating the
sexagesimal
Right Ascension in hours with the sexagesimal Declination in degrees
according to the following scheme:
hhmmssss±ddmmsss
where ± specifies the sign of the Declination, either '+' or
'-'. Several of the tables in the archive include the name of the
target stars in this format, in a column called 'cName'. The names
tabulated in column 'cName' are derived from each star's equatorial
coordinates as supplied by ESO. Currently the following tables
contain a 'cName' column:
Target |
Spectrum |
AstroAnalysis |
Is a given star in the archive?
A list of all the stars in the GES archive is stored
in the 'Target' table. This table contains two columns of star
names. One is column 'cName', as described above, which contains
the name derived from the star's equatorial coordinates. The
other column is called 'esoName' and contains the star's name as
returned by ESO (and originally specified by the GES Consortium
when the star was selected for inclusion in the survey), in the same
format as 'cName'. Usually the two names will be the same for a
given star, but they may sometimes differ in the least significant
digit in either coordinate. The following queries select all the
information in table 'Target' for star 11053303-7700120 using the
'cName' and 'esoName' column respectively (for this star the two
names are the same):
SELECT * FROM Target WHERE cName ='11053303-7700120';
SELECT * FROM Target WHERE esoName='11053303-7700120';
Which (if any) of the following list of stars are in
the archive?
If you wish to check which of the stars in a list are
in the archive then the SQL 'IN' clause can be used. The following
queries show the use of this clause for selections on both the
'cName' and 'esoName' columns. Note that in principle there is no
restriction on the size of the list. Also note that only stars in
the list that are found in the archive will be listed; any which
are not in the archive will not appear (star 'bad-name' is included
in the example to illustrate this point).
SELECT * FROM Target WHERE
cName IN('11034945-7700101', '11044460-7706240', 'bad-name',
'11053303-7700120');
SELECT * FROM Target WHERE
esoName IN('11034945-7700101', '11044460-7706240', 'bad-name',
'11053303-7700120');
Any stars not in your list can be identified using a
query of the (slightly cumbersome) form:
SELECT * FROM (
VALUES ('11034945-7700101'),
('11044460-7706240'),
('bad-name'),
('11053303-7700120')) AS starList(starName)
WHERE starName NOT IN (SELECT cName FROM Target);
Select all the stars within a given range of RA and
Dec.
The J2000 Right Ascension and Declination of stars in
the GES survey are respectively stored in columns 'ra' and 'dec'
of table 'Target'. Both coordinates are stored in decimal degrees
(note in particular that the Right Ascension is not stored
in hours) and southern Declinations are negative. Thus, the
first step is to convert the coordinates of your range to this
format. The stars enclosed in the region can then be found with
a query of the form:
SELECT * FROM Target WHERE
(ra BETWEEN ra_min AND ra_max) AND
(dec BETWEEN dec_min AND dec_max);
Suppose your range was 70 to 80 degrees of Right
Ascension and -45 to -30 degrees of Declination then the
corresponding SQL would be:
SELECT * FROM Target WHERE
(ra BETWEEN 70 AND 80) AND
(dec BETWEEN -45 AND -30);
List the magnitudes and colours available for a given set of stars
Magnitudes and colours in table Target
Table Target includes magnitudes and colours for the stars in
the GES survey that have been obtained from a number of public surveys. The
surveys included are as follows:
Survey |
Acronym |
Photometric bands included |
VISTA VHS |
- |
j, h, k |
Two-micron All Sky Survey |
2MASS |
j, h, k |
UK Infrared Deep-Sky Surveys |
UKIDSS |
j, h, k |
Sloan Digital Sky Survey |
SDSS |
u, g, r, i, z |
AAVSO Photometric All-Sky Survey |
APASS |
v, b, g, r, i |
Johnson magnitudes |
- |
u, b, v, r, i |
Each photometric band or magnitude for each survey is
is included as a column of Target and the name of this column is
formed in a uniform way as follows:
band name + 'Mag' + survey acronym
In addition Target includes:
for each magnitude an estimate of its error (with a column name
formed by appending 'Err' to the name of the corresponding magnitude
column),
for every survey a measure of the angular separation, in seconds of
arc, between the GES coordinates for the star and its survey coordinates
(with a column named formed by inserting the string 'dist' before the
survey's acronym).
These rules have the following exceptions:
Thus, for each of the surveys the names of the magnitude and
error columns for the first photometric band and the angular separation
column are as follows:
Survey |
magnitude |
error |
angular separation |
VISTA VHS |
jMag |
jMagErr |
distVISTA |
2MASS |
jMag2mass |
jMag2massErr |
dist2mass |
UKIDSS |
jMagUkidss |
jMagUkidssErr |
distUkidss |
SDSS |
uMagSdss |
uMagSdssErr |
distSdss |
APASS |
vMagApass |
vMagApassErr |
distApass |
Johnson catalogue magnitudes |
uMag |
- |
- |
To list the VISTA VHS magnitudes and errors and the angular
separation for a set of stars:
SELECT
cname, jMag, jMagErr, hMag, hMagErr, ksMag, ksMagErr, distVISTA
FROM
Target
WHERE
cname IN('00024679-4702544', '00315212-4402080', '11034945-7700101', '23570212-4803198')
ORDER BY cname;
Magnitudes are not available for every star in every band of every
survey. Where no measurement is available the usual approach of storing a
default value well outside the range of plausible values for a stellar
magnitude is adopted. In the example ksMag and its error are not available for
star 00315212-4402080 and no VISTA VHS magnitudes are available for
11034945-7700101.
Queries on Spectra
These queries return details of spectra available in the GES archive.
Recall that each star may have more than one spectrum (because it was
observed more than once).
Which (if any) spectra are available for a
given star?
All the spectra in the GES archive are listed in
table 'Spectrum'. This table contains auxiliary information
about each spectrum
(metadata in the jargon of
computer science), such as a magnitude estimate for the target
star, the observing priority, the exposure time, etc.
For convenience of identifying stars a 'cName' column is
included listing each star's name. Other information pertaining
to the target star, rather than to the spectrum, can be listed
by joining the 'Spectrum' and 'Target' tables. The spectra
themselves are not stored in a database table but as FITS files.
As a first example, to list all the spectra for star
11053303-7700120:
SELECT * FROM Spectrum WHERE cName ='11053303-7700120';
Which (if any) spectra are available for a
given list of stars?
Queries to list all the spectra available for a list
of stars are similar to those for a single star (above) but use
the 'IN' clause to specify the star list. Note that in
principle there is no restriction on the size of the star list.
Also note that only stars in the list that are found in the
archive will be listed; any which are not in the archive will not
appear (star 'bad-name' is included in the example to illustrate
this point). The following query lists all the spectra
available for a list of stars:
SELECT * FROM Spectrum WHERE
cName IN('11034945-7700101', '11044460-7706240', 'bad-name',
'11053303-7700120');
Any stars with no spectra can be identified using a
query of the (slightly cumbersome) form:
SELECT * FROM (
VALUES ('11034945-7700101'),
('11044460-7706240'),
('bad-name'),
('11053303-7700120')) AS starList(starName)
WHERE starName NOT IN (SELECT cName FROM Spectrum);
How many spectra are available for each of a
given list of stars?
The following query counts the number of
spectra for each of the stars in a list. Note that any stars for
which there are no spectra are not included in the returned list
(star 'bad-name' is included in the example to illustrate
this point).
SELECT cName AS 'star',
COUNT(cName) AS 'no. of spectra'
FROM Spectrum WHERE
cName IN ('11034945-7700101', '11044460-7706240', 'bad-name',
'11053303-7700120')
GROUP BY cName ORDER BY cName;
See the previous example for how to check for any
stars in the list which have no spectra.
List all the spectra available for all the
stars within a given range of RA and Dec.
As previously described queries to find all
the stars in a given region of Right Ascension and Declination
must be made on the 'Target' table because it is the only
table to list each star's celestial coordinates. The 'Target'
table can then be joined with the 'Spectrum' table to find
the spectra available for each star. For example, to list the
name, equatorial coordinates, exposure time, signal-to-noise
ratio and magnitude of all the spectra for all the stars in
the range 70 to 80 degrees of Right Ascension and -45 to -30
degrees of Declination:
SELECT
tg.cname, tg.ra, tg.dec, sp.expTime, sp.snr, sp.mag
FROM
Target tg,
Spectrum sp
WHERE tg.targetId = sp.targetId
AND (tg.ra BETWEEN 70 AND 80)
AND (tg.dec BETWEEN -45 AND -30);
Internal identifiers in GES archive tables
The above query joined the 'Target' and 'Spectrum' tables. This
operation could have been done using the 'cName' column to identify
corresponding rows in the tables since this column occurs in both
tables. However, it was actually done using a column called 'targetId'
which also occurs in both tables. These 'targetId' columns have a similar
purpose to 'cName': to uniquely identify a given star (or 'target') and
hence to allow joins to proceed by identifying rows in the two tables
pertaining to the same star.
The advantages of using column 'targetId' rather than column 'cName' are that
the former is numeric and indexed, which permits fast and efficient access.
Consequently 'targetId' should be used in preference to 'cName' to identify
corresponding stars in two or more tables. However, you should never need to
know the actual values of 'targetId' (they are just numbers) as they are invented
internally for the archive and have no wider astronomical significance. Moreover,
they are created afresh for each release of the database, so do not rely on
them remaining the same in different releases. For example, if you make a note of
the 'targetId' of your favourite star in the current release and then query the
following release, when it appears, using this value you will retrieve data for a
different star.
The archive contains several other identifiers in addition to 'targetId'. For
example, every row in the 'Spectrum' table also has an identifier, column 'specId',
which uniquely identifies it. This identifier is used, for example, in identifying
the spectrum from which individual astrophysical analysis parameters (effective
temperature etc.) have been derived. Several different types of identifier
will appear in the examples below.
Which (if any) spectra are available for a
given list of stars and with which spectrograph were they
obtained?
The 'Spectrum' table does not include a column
listing the spectrograph with which it was acquired, so
a more involved approach is required to show the instrument used.
GES spectra are all obtained using one of two
multi-object spectrographs: GIRAFFE and UVES. Such instruments
acquire a group (or 'frame') of spectra simultaneously (and are
related to ESO's 'OBs' or 'observing blocks'). The 'SpecFrame' table
lists all such frames included in the GES survey and contains
details pertaining to the entire frame rather than individual
spectra. It includes column 'instrument' which lists the
spectrograph used. The values corresponding to the two
instruments are: 'GIRAFFE' and 'UVES' (note that the values are in
upper case). To show which spectrograph was used, the rows
selected from the 'Spectrum' table must be joined to the rows for
their parent frames in the 'SpecFrame' table. The 'SpecFrame' table
has a column, 'specFrameId', which contains an integer value that
uniquely identifies each specFrame (see the note about identifiers,
above). Table 'Spectrum' also contains a 'specFrameId' column and it
lists the identifier of the specFrame from which each spectrum was
extracted. Thus:
SELECT
spec.cName, frame.instrument
FROM
Spectrum spec,
SpecFrame frame
WHERE spec.specFrameId = frame.specFrameId
AND spec.cName IN ('11034945-7700101', '11044460-7706240', '21101955-0200414');
A similar query can be used to show only the
spectra obtained with a given spectrograph:
SELECT
spec.cName, frame.instrument
FROM
Spectrum spec,
SpecFrame frame
WHERE spec.specFrameId = frame.specFrameId
AND spec.cName IN ('11034945-7700101', '11044460-7706240', '21101955-0200414')
AND frame.instrument = 'UVES';
It is also possible to combine the 'Spectrum', 'SpecFrame'
and 'Target' tables to list all the spectra available in a given range
of Right Ascension and Declination and to show the spectrograph with which
they were observed:
SELECT
tg.cname, tg.ra, tg.dec, frame.instrument, sp.expTime
FROM
Target tg,
Spectrum sp,
SpecFrame frame
WHERE tg.targetId = sp.targetId
AND sp.specFrameId = frame.specFrameId
AND (tg.ra BETWEEN 70 AND 80)
AND (tg.dec BETWEEN -45 AND -30);
The values of column 'instrument' in the 'SpecFrame'
table corresponding to the two spectrographs used are 'GIRAFFE'
and 'UVES', however to check which values actually occur in
the table:
SELECT DISTINCT instrument FROM SpecFrame;
or to check the number of times each occurs and to
order the resulting list alphabetically by instrument:
SELECT instrument, COUNT(instrument)
FROM SpecFrame
GROUP BY instrument
ORDER BY instrument;
You are likely to find that your queries of spectra will
often also involve columns from 'SpecFrame', as in the above examples:
some of the properties that are naturally thought of as attributes of
a spectrum (such as the instrument used to acquire it or its exposure
time) are stored in 'SpecFrame' because they are common to all the
spectra in the frame. For convenience all the columns in table
'Spectrum' and some of the more often-used columns in 'SpecFrame' are
combined in the view 'SpectrumAndFrame'. In the context of
relational databases a view is simply a pre-defined combination or
subset of tables provided along with the basic tables of the database.
The views included with the GES archive work exactly like tables and
are queried in the same way. The 'SpecFrame' column 'instrument' is
included in the 'SpectrumAndFrame' view, so, the previous example
to list the instrument used to acquire each of a list of spectra
could be more conveniently and concisely expressed as:
SELECT
cName, instrument
FROM
SpectrumAndFrame
WHERE cName IN ('11034945-7700101', '11044460-7706240', '21101955-0200414');
Often you will find it more convenient to use view
'SpectrumAndFrame' than table 'Spectrum'.
How do I list all the details available for a given Spectrum Frame?
Details available for each Spectrum Frame
Every spectrum frame in the archive was ingested into it from a
FITS file, and the columns of table SpecFrame,
such as telescope, instrument or grating, come from keywords in this FITS file.
The spectrum frame files contain many keywords, but only a few are imported into
columns in table SpecFrame; the ones most likely to be useful when querying spectra.
However, all the keywords read from the FITS file are available in the archive; they
are stored in table SpecFrameFitsKey.
Each keyword is not stored as a separate column in SpecFrameFitsKey
because there are too many keywords for this to be practical. Rather each keyword
is stored as a name / value pair with the name of the keyword stored in column
'name' and the associated value in column 'value'. Finally, just as column specFrameID
in table Spectrum allows spectra to be associated with their parent spectrum frame
(as discussed above) so a similar specFrameID column is included in table SpecFrameFitsKey
to allow FITS keywords to be associated with their parent spectrum frame.
First, to determine the number of keywords available for a given spectrum
frame simply query table SpecFrameFitsKey specifying the specFrameID of the frame:
SELECT
COUNT(*)
FROM
SpecFrameFitsKey
WHERE specFrameID = 8;
and similarly, to list all the keywords for this frame:
SELECT
specFrameID, extNum, name, value, units
FROM
SpecFrameFitsKey
WHERE specFrameID = 8;
There are a number of points to note from these examples:
Every spectrum frame has many keywords associated with it, typically
between 1000 and 3000.
In addition to columns for its name and value each keyword also has
columns tabulating any units the value may have and any description provided
for it.
The original FITS files contained multiple FITS extensions, each
with its own set of keywords. Keyword names are often duplicated between extensions;
indeed many of the extensions include copies of keywords from the first (or primary)
extension. Thus, table SpecFrameFitsKey includes column extNum which tabulates the
extension number that the keyword came from; you may need to use it to identify a
particular keyword.
The keyword names conform to the conventions for ESO Hierarchical FITS
rather than those for standard FITS keywords (if you care about such things).
Listing one or more named keywords for a frame is more likely to be useful
than listing all the frame's keywords because of the large number available. Remember
to either specify the appropriate extension number in your selection or to list the
extension number amongst the columns you select. Often simply selecting keywords from
the first (or primary) extension will be adequate:
SELECT
specFrameID, extNum, name, value, units
FROM
SpecFrameFitsKey
WHERE specFrameID = 2106
AND extNum = 0
AND name IN ('WAVELMAX', 'WAVELMIN', 'SPEC_BIN', 'SPEC_BW', 'SPEC_RES', 'SPEC_VAL')
ORDER BY name;
Often it will be convenient to join table SpecFrameFitsKey to tables
SpecFrame or Spectrum so that you do not need to specify individual specFrameIDs. For
example, to see the values of keywords that apply to each of the spectra that have been
obtained for a given star:
SELECT
spec.cname, keys.extNum, keys.name, keys.value, keys.units,
spec.specFrameID, keys.specFrameID
FROM
Spectrum spec,
SpecFrameFitsKey keys
WHERE spec.cname = '11034945-7700101'
AND keys.extNum = 0
AND keys.name IN ('WAVELMAX', 'WAVELMIN', 'SPEC_BIN', 'SPEC_BW', 'SPEC_RES', 'SPEC_VAL')
AND spec.specFrameID = keys.specFrameID
ORDER BY spec.specFrameID, name;
Columns from table SpecFrame can similarly be included:
SELECT
spec.cname, frame.instrument, frame.grating,
keys.extNum, keys.name, keys.value, keys.units,
spec.specFrameID, frame.specFrameID, keys.specFrameID
FROM
Spectrum spec,
SpecFrame frame,
SpecFrameFitsKey keys
WHERE spec.cname = '11034945-7700101'
AND keys.extNum = 0
AND keys.name IN ('WAVELMAX', 'WAVELMIN', 'SPEC_BIN', 'SPEC_BW', 'SPEC_RES', 'SPEC_VAL')
AND spec.specFrameID = frame.specFrameID
AND spec.specFrameID = keys.specFrameID
ORDER BY spec.specFrameID, name;
How do I download a single spectrum (singleSpec file) from the archive?
Spectrum files in the GES archive
The GES archive includes two types of files containing spectra: so-called
singleSpec and manySpec files. In order to understand the
difference recall that the GES observations are made with multi-object
spectrographs which typically acquire a number of spectra simultaneously.
- SingleSpec file
contains a single one-dimensional spectrum of a single object. All
the observations of the object made with a given instrument configuration
have been co-added or stacked into a single spectrum.
- ManySpec file
contains a collection or frame of spectra acquired simultaneously.
In the final manyspec files currently available all the spectra in the
frame have been stacked from all the observations of the frame made with
a given instrument configuration. The spectra themselves are
one-dimensional but they are stored in a two-dimensional array (with one
axis corresponding to wavelength and the other to an index for each each
spectrum in the frame).
Note that in release iDR4, unlike earlier releases, manySpec files are only
available for GIRAFFE spectra. Though there are circumstances where you may want
either file (if both are available), usually singleSpec files will be more useful
and convenient. The names of individual files in the sets are stored in two
different tables in the archive, in both cases in a column called 'fileName':
Type of file |
Table |
File tabulated in column 'fileName' |
SingleSpec |
SpectrumGroup |
FITS file of an individual stacked spectrum |
ManySpec |
SpecFrame |
FITS file of a complete spectrum frame |
Both singleSpec and manySpec files are stored in FITS
format. A report describing the format is available for
download (175 Kbyte).
Once you have identified a set of spectra that are of interest
you can download singleSpec files containing them. Recall that each row in
table 'Spectrum' corresponds to a single spectrum, identified by a unique
'specID', and tabulates the details characterising it. These details were
extracted from keywords in the FITS files containing the spectrum and comprise the
metadata
available for it. For most spectra tabulated in 'Spectrum' a singleSpec
file containing the spectrum is also available. The names of these files are
tabulated in column 'fileName' of table 'SpectrumGroup'. If this column is
included in a selection then an additional column, 'getFLink', is also listed
which provides a link to the singleSpec file. Simply click on this link to
retrieve a copy. Since column 'fileName' is in table 'SpectrumGroup' usually
you will need to join it to table 'Spectrum' using the 'specID' column in both
these tables. For example to download the spectra available for a given star:
SELECT DISTINCT
spec.cName, spec.specID, spg.specID, spg.fileName
FROM
Spectrum spec,
SpectrumGroup spg
WHERE spec.specID = spg.specID
AND cName ='11053303-7700120';
(The DISTINCT clause is simply to remove duplicate entries found in
the 'SpectrumGroup' table; see the following section,
Queries on Individual Analyses, for further discussion
of 'SpectrumGroup'.) To retrieve the required files simply click on the
appropriate entries in the 'getFLink' column in the listing generated by the
query.
Clicking on individual links is impractical if you wish to download a
large number of files. In this case see the item '
How do I download a large number of files?' below.
How do I download a spectrum frame (manySpec) file from the archive?
Recall that in release iDR4 manySpec files are only available for
GIRAFFE spectra. The names of the manySpec files of frames available in the archive
are tabulated in column 'fileName' of table 'SpecFrame' ('SpecFrame' basically
contains FITS keywords extracted from these files). In a similar way to the
singleSpec 'fileName' column in table the 'SpectrumGroup' columns in the previous
example, if the 'specFrame' column 'fileName' is included in a selection then an
additional column, 'getFLink', will be listed containing a link to download a copy
of the manySpec file. For example, to download the spectrum frame manySpec file from
which a spectrum of a given star was extracted then table 'SpecFrame' should be
joined with table 'Spectrum':
SELECT
spec.cName, spec.specFrameID, frame.specFrameID, frame.fileName, frame.instrument
FROM
Spectrum spec,
SpecFrame frame
WHERE spec.specFrameID = frame.specFrameID
AND cName ='10442506-6415397';
To retrieve the required manySpec files simply click on the appropriate
entries in the 'getFLink' column in the listing generated by the query,
as in the example for spectrum singleSpec files (above).
As for the singleSpec files, clicking on individual links is impractical
if you wish to download a large number of files. In this case again see the item
'How do I download a large number of files?' below.
-
How do I download a large number of files from the archive?
Clicking links to download individual files is fine to retrieve copies of a
few files but impractical for a large number. An alternative mechanism is provided to
handle this latter case. It uses common Unix shell commands and hence can be scripted.
Two shell commands for downloading Web pages and files are in common use: wget
and curl. wget has been around for a
while whereas curl is newer. Either or both are likely to be
available on Linux systems whereas recent versions of Mac OS X, at least, only have
curl.
The function 'dbo.fWgetCmd' has been added to the SQL parser in the GES
archive. It is given a single argument, the name of a column containing a file name,
and it returns the appropriate wget command to download a copy
of the file. 'dbo.fWgetCmd' works with both the 'SpectrumGroup' (for singleSpec files)
and 'SpecFrame' (for manySpec files) tables. Other columns can also be listed in the
query. For example to select singleSpec files from 'SpectrumGroup':
SELECT DISTINCT
spec.cName, spg.fileName, dbo.fWgetCmd(spg.filename) AS 'Download_command'
FROM
Spectrum spec,
SpectrumGroup spg
WHERE spec.specID = spg.specID
AND cName ='11053303-7700120';
In this example only two rows are returned; in practice you would use
'dbo.fWgetCmd' in queries where you wished to select a larger number of spectra. Similarly,
to select manySpec files from 'SpecFrame':
SELECT
spec.cName, frame.fileName, dbo.fWgetCmd(frame.filename) AS 'Download_command'
FROM
Spectrum spec,
SpecFrame frame
WHERE spec.specFrameID = frame.specFrameID
AND cName ='11053303-7700120';
Once your query has run the wget commands
listed by 'dbo.fWgetCmd' can be executed as you prefer. However, shell script
crtdownloadscrpt.sh
is available to simplify this task. To use it proceed as follows.
Before submitting your query choose the 'ASCII FILE' option for the
results file, so that the table generated will be written as a
CSV file.
Retrieve a copy of crtdownloadscrpt.sh if you
have not already done so (click here
to retrieve a copy).
The retrieved file must be executable. Change its permission if
necessary:
chmod u+x ./crtdownloadscrpt.sh
crtdownloadscrpt.sh will read your CSV file of
results and create a script to automatically download all the file URLs
tabulated by 'dbo.fWgetCmd'. Any other columns tabulated in the CSV file
will be ignored. crtdownloadscrpt.sh creates a
script to retrieve the files using either wget or
curl. In the case of wget
it just extracts the entries generated by 'dbo.fWgetCmd'. For
curl it substitutes wget
with curl and makes the necessary changes to the
command-line arguments.
To use crtdownloadscrpt.sh to generate
a wget script start a Unix terminal window, make
the directory containing the CSV file and
crtdownloadscrpt.sh the current directory and type:
./crtdownloadscrpt.sh csv-file-name
or to generate a curl download script:
./crtdownloadscrpt.sh csv-file-name curl
(Any second argument to crtdownloadscrpt.sh
will cause it to create a curl rather than a
wget script.) The download script will have the
same name as the CSV file but file type .sh.
Again you might need to change the permission of the new download
script:
chmod u+x ./download-script
Finally, run the new download script:
./download-script
Queries on Nightly Spectra
Please note that in conformance with the normal
Consortium policy
you must obtain permission from the PIs before using the
nightly spectra in publications or calculations leading to publications.
Types of spectra in the GES archive
The GES data archive contains only fully reduced wavelength and
intensity calibrated spectra; it does not contain raw or partly reduced
observations. Nonetheless it includes two types of spectra: 'stacked' and
'nightly' spectra:
- Stacked Spectra
are typically the result of combining spectra taken over
multiple nights and are necessarily composite, time-averaged spectra of the
star observed. The details of stacked spectra are listed in table Spectrum.
All the examples of querying spectra given hitherto in this tutorial have
referred to stacked spectra.
- Nightly spectra
contain the spectrum of a star as observed during a single
night. Typically several nightly spectra will be combined to yield a single
composite stacked spectrum.
Stacked spectra are entirely adequate for many sorts of astronomical
investigation and have the advantage of being less noisy than nightly spectra
because they are the result of combining more observations. You would use
stacked spectra in preference to nightly ones unless there was a reason not to.
However, for studies of variable or binary stars where some aspect of the
spectrum changes with time you are likely to need to refer to the nightly
spectra.
The details of the nightly spectra are tabulated in table
SpectrumNightly which has columns somewhat similar to those of table Spectrum.
Each nightly spectrum is identified by a unique sequence number or identifier,
which is stored in column specNightlyID. Table SpectrumNightly also includes a
column specID which lists the identifier of any stacked spectrum to which the
nightly spectrum contributes. This column can be used to used to join
tables SpectrumNightly and Spectrum, and thence join other tables such as
SpecFrame or Target.
List all the nightly spectra that constitute a given stacked
spectrum
To list all the nightly spectra used to create a given stacked
spectrum simply select all the entries in table SpectrumNightly with the
spectrum identifier (column specID) of the stacked spectrum:
SELECT
specNightlyID, specID, expTime, dateObs, mjdObs, airmassStart, rmsTrace
FROM
SpectrumNightly
WHERE
specID = '13918';
List all the nightly spectra available for a given star
Similarly it is possible to list all the nightly spectra
available for a given star, identified by its cName (recall that the archive
can contain multiple stacked spectra for a given star). SpectrumNightly does
not tabulate cName so it must be joined with Spectrum:
SELECT
spec.cname, spec.specID, night.specNightlyID, night.expTime, night.dateObs, night.mjdObs
FROM
SpectrumNightly night,
Spectrum spec
WHERE night.specID = spec.specID
AND spec.cname = '11010007-7738516'
ORDER BY dateObs;
Note that in this example the nightly spectra are listed in
order of the date on which they were observed which is likely to be useful
when studying time-dependent phenomena.
List all the radial velocities available for a given star
In studies of binary and multiple systems the radial velocities
tabulated in table SpectrumNightly are likely to be of interest. SpectrumNightly
contains two sets of radial velocity columns, one listing values computed from
Giraffe spectra and the other values from UVES spectra. The details are:
Column |
Description |
vel |
The radial velocity measured from Giraffe spectra. |
velErr |
The error on vel. |
rv |
The radial velocity measured from UVES spectra. |
rvErr |
The error on rv. |
In both cases the radial velocities are heliocentric, have the
usual convention that recessional velocities are positive and have been
determined by cross-correlation. To see all the radial velocities available
columns vel and rv must both be listed:
SELECT
spec.cname, spec.specID, night.specNightlyID, night.dateObs,
night.rv, night.rvErr, night.vel, night.velErr
FROM
SpectrumNightly night,
Spectrum spec
WHERE night.specID = spec.specID
AND spec.cname = '11010007-7738516'
ORDER BY dateObs;
To see additional details, such as the instrument and grating
setting used when the nightly spectra were observed, tables SpectrumNightly
and Spectrum can be joined with table SpecFrame:
SELECT
spec.cname, spec.specID, night.specNightlyID, night.dateObs,
night.rv, night.rvErr, night.vel, night.velErr,
frame.instrument, frame.grating
FROM
SpectrumNightly night,
Spectrum spec,
SpecFrame frame
WHERE night.specID = spec.specID
AND spec.specFrameId = frame.specFrameId
AND spec.cname = '11010007-7738516'
ORDER BY dateObs;
Queries on Recommended Analyses
Aside on recommended and other parameters
This discussion applies to release GESiDR2; subsequent
releases may be different and previous releases were different.
The spectra acquired as part of GES are reduced and analysed by the GES
Consortium. The structure of the Consortium includes several working
groups and each working group typically comprises several nodes.
- Working groups
typically coordinate analyses of a set of stars, usually of a given
spectral class (or range of spectral classes) and/or observed with a given
spectrograph (GIRAFFE or UVES). The actual analyses are performed by the
nodes comprising the woking group.
- Nodes
within a working group perform an individual analysis on the stars
assigned to the working group or a subset of them. The nodes use a
variety of analysis methods to arrive at their sets of parameters and
abundances.
Every node analysis produces a set of astrophysical parameters pertaining
to the entire spectrum (such as the effective temperature or surface gravity)
and, in some cases, abundances of a set of species for each star that it
works on. The working group then combines these results into a single
preferred set of astrophysical parameters and abundances that it recommends.
The archive contains both these working group recommended parameters and the
individual parameters computed by the various nodes. Moreover, often the
individual nodes will perform two types of analyses: one where they determine
both astrophysical parameters and abundances and a second in which they adopt
the astrophysical parameters recommended by their parent working group and
determine just the abundances.
Finally there is one working group (WG15) which does not perform analyses
itself but produces a recommended, homogenised set of results from the
recommended results of Working Groups 10-14 (the selection criteria for
recommended values are described in the
WG15 report).
It is Consortium
policy that the recommended, homogenised WG15 parameters and
abundances must be used in all GES publications and calculations leading to
such publications.
All the different types of result are stored in table 'AstroAnalysis' and a
set of views are defined on this table corresponding to each of the types
of result (the columns are the same in all cases). This section gives
examples of querying the WG15 recommended parameters and the following
section gives examples of querying the other views.
List the recommended analysis parameters for all the spectra
of a given star
All the recommended parameters determined for stars in the archive
are available in view 'RecommendedAstroAnalysis' (a view is an entity in a
relational database which for the present purposes behaves like a table). The
columns in view 'RecommendedAstroAnalysis' include 'cName' which lists the name
of the star observed and 'wg' which lists the name of the working group that
performed the analysis, in the form 'WGxx', for example 'WG10'. To list
selected parameters (here effective temperature, log surface gravity, [Fe/H]
ratio, Li I abundance and C II abundance) for all the spectra observed for a
given star and the name of the working group that performed the analyses:
SELECT cName, wg, teff, logg, feh, li1, c1
FROM RecommendedAstroAnalysis
WHERE cName ='11053303-7700120';
Note that two records are returned as this star has been analysed by
WG11 and WG12; in general a given spectrum may be analysed by more than one
working group.
List the recommended analysis parameters for all the spectra
available for a list of stars
Similarly to list selected parameters for all the spectra observed
for a list of stars:
SELECT cName, wg, teff, logg, feh, li1, c1
FROM RecommendedAstroAnalysis
WHERE cName IN ('11034945-7700101', '11044460-7706240', '21101955-0200414')
ORDER BY cName;
The list is ordered by 'cName' so that results for the same star
appear together.
List recommended analysis parameters alongside information about
the spectrum from which they were obtained.
Aside on linking recommended parameters to their parent spectra
To list analysis parameters determined from a spectrum alongside information
about the spectrum it is necessary to join the 'RecommendedAstroAnalysis'
and 'Spectrum' tables. However, these tables cannot be joined directly,
but must be joined through the intermediate table 'SpectrumGroup'. The
reason that 'SpectrumGroup' is needed is as follows. Usually recommended
parameters are derived from a single spectrum. However, in some cases they
are derived from two or more spectra, typically covering different wavelength
regions. To cope with these latter cases the notion of the 'spectrum group'
was introduced.
A spectrum group is simply a unique group of spectra from which recommended
parameters have been derived. Most spectrum groups will consist of a single
spectrum, but some will consist of two or more.
Each spectrum group has a unique identifier, which is tabulated in
'RecommendedAstroAnalysis' as column 'specGroupId'. Table 'SpectrumGroup'
lists the spectrum identifiers of the spectra that constitute each spectrum
group. If the spectrum group contains two spectra then the query will return
two rows for each recommended parameter, one for each spectrum. It is a
little easier to see what is going on if the 'specGroupId' and 'specId'
identifiers are included in the listing (though, of course, they have no
significance outside the GES archive):
SELECT
spg.specGroupId, sp.specId,
racc.cName, racc.wg, racc.teff, racc.logg, racc.feh,
sp.expTime, sp.snr
FROM
RecommendedAstroAnalysis racc,
SpectrumGroup spg,
Spectrum sp
WHERE racc.specGroupId = spg.specGroupId
AND spg.specId = sp.specId
AND racc.cName ='11053303-7700120';
In any event, the upshot is that the 'RecommendedAstroAnalysis' and
'Spectrum' tables must be linked using the 'SpectrumGroup' table.
To list analysis parameters determined from a spectrum alongside
information about the spectrum it is necessary to join the
'RecommendedAstroAnalysis' and 'Spectrum' tables. However, these tables
cannot be joined directly, but must be joined through the intermediate table
'SpectrumGroup', as explained above. So, for example:
SELECT
racc.cName, racc.wg, racc.teff, racc.logg, racc.feh, racc.gratings,
sp.expTime, sp.snr,
spg.fileName
FROM
RecommendedAstroAnalysis racc,
SpectrumGroup spg,
Spectrum sp
WHERE racc.specGroupId = spg.specGroupId
AND spg.specId = sp.specId
AND racc.cName ='11053303-7700120';
In this example in addition to the working group and some recommended
parameters (effective temperature, log surface gravity and FeH ratio) the exposure
time and signal-to-noise ratio of the spectrum from which they were derived are
listed.
It is, of course, possible to display additional information
about the spectra by joining the 'RecommendedAstroAnalysis', 'SpectrumGroup'
and 'Spectrum' tables with the 'SpecFrame' table in the same way that
the 'Spectrum' and 'SpecFrame' were joined (above). For example, to
include the spectrograph used to acquire the spectra in the above
query:
SELECT
racc.cName, racc.wg, racc.teff, racc.logg, racc.feh,
sp.expTime, sp.snr,
frame.instrument
FROM
RecommendedAstroAnalysis racc,
SpectrumGroup spg,
Spectrum sp,
SpecFrame frame
WHERE racc.specGroupId = spg.specGroupId
AND spg.specId = sp.specId
AND sp.specFrameId = frame.specFrameId
AND racc.cName ='11053303-7700120';
Queries on Recommended Radial and Rotational Velocities
See
separate notes
(which require login).
Queries on Working Group Recommended and Individual Node Analyses
It is Consortium policy that you must obtain permission from the PIs to use
the quantities described in this section in publications.
As described in the previous section, each working group comprises several
nodes and each node performs an independent analysis on some or all of the
spectra (or rather spectrum groups) assigned to the group. The working
group then combines these individual results to derive a set of astrophysical
parameters and abundances recommended by the group. The individual nodes
may perform a second set of analyses by adopting the astrophysical
parameters recommended by the group and redetermining the abundances. Finally
Working Group 15 uses the results of the various other groups to produce an
overall recommended set of parameters (which are tabulated in view
'RecommendedAstroAnalysis' used in the previous section).
All these different types of result are stored in table 'AstroAnalysis' and
there are views corresponding to each. The following table gives the details:
View |
Description |
RecommendedAstroAnalysis |
Recommended, homogenised WG15 parameters and abundances. |
WgRecommendedAstroAnalysis |
Working group recommended parameters and abundances (for each working group) |
WpNaAstroAnalysis |
Individual node abundances determined using the parent working group's
recommended astrophysical parameters. |
NpNaAstroAnalysis |
Astrophysical parameters and abundances determined by the individual nodes. |
AstroAnalysis |
All results. |
Where a query of 'RecommendedAstroAnalysis' would yield a single row
corresponding to the overall, WG15 recommended parameters for a spectrum
(or rather a spectrum group) a query of 'WgRecommendedAstroAnalysis' would
return several rows if the spectrum had been analysed by more than one
working group. Similarly, a query of 'WpNaAstroAnalysis' or
'NpNaAstroAnalysis' would yield a set of rows, each row corresponding to an
analysis by an individual node. The node responsible for the analysis is
listed as column 'nodeName' (and working group recommended parameters have a
'nodeName' of the name of the working group). A query directly on table
'AstroAnalysis' would yield all the results for the spectrum group, though
this is less likely to be useful.
As an example, to list selected parameters (here effective temperature, log
surface gravity, [Fe/H] ratio, Li I abundance and C I abundance) recommended
by the various working groups for all the spectra observed for a given star:
SELECT cName, wg, nodeName, teff, logg, feh, li1, c1
FROM WgRecommendedAstroAnalysis
WHERE cName ='11053303-7700120'
ORDER BY wg;
Multiple rows may be returned, with each row corresponding to the results
computed by a given node. The selection can be further restricted to include
just the results from a given working group:
SELECT cName, wg, nodeName, teff, logg, feh, li1, c1
FROM WgRecommendedAstroAnalysis
WHERE cName ='11053303-7700120'
AND wg = 'WG12';
The results from individual nodes can be shown by querying
views 'WpNaAstroAnalysis' or 'NpNaAstroAnalysis'. For example, to show
all the results for a given star where the nodes were computing both
astrophysical parameters and abundances:
SELECT cName, wg, nodeName, teff, logg, feh, li1, c1
FROM NpNaAstroAnalysis
WHERE cName ='11053303-7700120'
ORDER BY wg, nodeName;
Note that the results are sorted by column 'wg' and then 'nodeName'
so that the results for each working group appear together and
within each working group the nodes are listed alphabetically. Exactly
the same query can, of course, be made directly on table 'AstroAnalysis',
though this is less likely to be useful:
SELECT cName, wg, nodeName, teff, logg, feh, li1, c1
FROM AstroAnalysis
WHERE cName ='11053303-7700120'
ORDER BY wg, nodeName;
In a similar fashion, all the examples in the previous section can be
changed to query one of the other views by replacing view
'RecommendedAstroAnalysis' with the appropriate view name and adding the
'ORDER BY' clause.
Queries cross-matching with the Gaia DR1 release and other external
archives
A full set of example queries cross-matching (or joining) the iDR5 tables to the
Gaia DR1 and other archives hosted by WFAU are provided in
separate notes.
Queries on Outlier Analyses
Three 'outlier' flags are present in table 'AstroAnalysis' and all the views on
it ('RecommendedAstroAnalysis', 'WgRecommendedAstroAnalysis', 'WpNaAstroAnalysis'
and 'NpNaAstroAnalysis'). Values of these flags indicate unusual features in one
or more of the spectra on which the analysis was performed (and thus the spectrum
deviates significantly from the norm for its spectral type and is an 'outlier').
The three columns of outlier flags are:
Column |
Description |
Code Range |
peculi |
Peculiarity flag(s) |
1000-2999 |
remark |
Spectral class flag(s) |
3000-8999 |
tech |
Technical issues flag(s) |
9000-15000 |
For a given analysis each column can contain one or more alphnumeric flags. These
flags are of the form:
numeric-code + alphabetic-confidence-designation
The range of numeric codes valid for each column is indicated in the table (above).
The alphabetic confidence designation is a single letter as follows:
Confidence |
|
Designation |
Meaning |
A |
probable |
B |
possible |
C |
tentative |
If the value of a flag for a given row contains multiple entries then they are
separated by a vertical bar ('|'). The
WG14 Dictionary
lists all the codes together with an explanation for each. A
version with
additional explanation is also available. Finally, the codes are also listed
at the end of the
iDR2 WG14 Report.
For most analyses the three outlier columns are empty (most spectra are not
outliers). However, the flags can be present in the analyses by individual
nodes (views 'WpNaAstroAnalysis' and 'NpNaAstroAnalysis'), each working group's
recommended values (view 'WgRecommendedAstroAnalysis') or the homogenised
recommended values prepared by WG15 (view 'RecommendedAstroAnalysis'). In
particular, WG14 only performed outlier analyses and did not otherwise analyse
the spectra. WG14 comprised four nodes but these nodes did not submit individual
analyses; rather they collated all their results into a single recommended set.
The WG14 results are present in view 'WgRecommendedAstroAnalysis', just like the
recommended values from other working groups, but the WG14 rows only have values for
the columns identifying or characterising the spectra ('cName', 'targetID',
'fieldName' etc.) and the three flags, 'peculi', 'remark' and 'tech'.
The WG14 rows can be selected from view 'WgRecommendedAstroAnalysis' (or table
'AstroAnalysis') just like those for other working groups. However, if you wish
to use the WG14 flags in conjunction with the results of other working groups,
including the WG15 homogenised values, then there is an important complication.
WG14 obtained its values by analysing individual spectra, not the
groups of spectra (often a red, blue pair) used by the other working groups.
Thus, to see which WG14 flags apply to which analyses by another working group
it is not possible to join the rows using their 'specGroupID' (because the
WG14 rows necessarily have a different 'specGroupID' from those of the other
working group). Rather, the join must be made by going via the
'specGroupID' to obtain the 'specID' of each spectrum in each spectrum group and
then joining these 'specIDs'. Two views have been defined to make using the WG14
results easier:
- RecommendedOutlierAnalysis
contains the WG14 flags joined to the WG15 flags for corresponding
rows. A few other WG15 columns characterising the target and spectrograph
setup (for example, 'cName', 'instrument', 'gratings' and 'fieldName') are also
included.
- SpectrumOutlierAnalysis
exposes the 'specID' of each WG14 row and also all the populated columns,
thus simplifying joins with other analyses.
Some simple examples of using these views follow.
Which WG14 and WG15 flags are available for a given star?
The 'RecommendedOutlierAnalysis' view includes column 'cName'
so simply select the row matching the required name:
SELECT * FROM RecommendedOutlierAnalysis
WHERE cName = '08064390-4731532';
How do the WG14 flags for a given star compare with those
derived by another working group?
View 'SpectrumOutlierAnalysis' can be used to simplify joining
the WG14 rows with those from another working group. For example to compare
the WG14 and WG11 recommended flags for a given star:
SELECT
wg14.*,
wg11.peculi AS 'WG11_peculi',
wg11.remark AS 'WG11_remark',
wg11.tech AS 'WG11_tech'
FROM
SpectrumOutlierAnalysis wg14,
WgRecommendedAstroAnalysis wg11,
SpectrumGroup sgp
WHERE wg11.wg = 'WG11'
AND wg11.specGroupID = sgp.specGroupID
AND wg14.specId = sgp.specId
AND wg11.cName = '00194037-4659596';
Note that the red and blue spectra were analysed individually
by WG14, but as a pair by WG11. Consequently the two rows of WG14 results
each pair with the single row of WG11 results, generating two output rows.
Similarly, it is possible to join the WG14 values to node, rather than
recommended, rows:
SELECT
wg14.*,
np11.peculi AS 'Nodes_WG11_peculi',
np11.remark AS 'Nodes_WG11_remark',
np11.tech AS 'Nodes_WG11_tech',
np11.nodeName AS 'WG11_Node_Name'
FROM
SpectrumOutlierAnalysis wg14,
NpNaAstroAnalysis np11,
SpectrumGroup sgp
WHERE np11.wg = 'WG11'
AND np11.specGroupID = sgp.specGroupID
AND wg14.specId = sgp.specId
AND np11.cName = '00194037-4659596'
ORDER BY np11.nodeName;
Again each WG11 node analysis has paired with two WG14 rows.
Finally, it is, of course, possible to perform joins directly using the
WG14 rows in 'WgRecommendedAstroAnalysis' rather than 'SpectrumOutlierAnalysis',
but there is no advantage in doing so and the join becomes more cumbersome:
SELECT
wg11.cName,
wg11.instrument AS 'WG11_instrument',
wg11.gratings AS 'WG11_gratings',
wg11.peculi AS 'WG11_peculi',
wg11.remark AS 'WG11_remark',
wg11.tech AS 'WG11_tech',
wg14.instrument AS 'WG14_instrument',
wg14.gratings AS 'WG14_gratings',
wg14.peculi AS 'WG14_peculi',
wg14.remark AS 'WG14_remark',
wg14.tech AS 'WG14_tech'
FROM
WgRecommendedAstroAnalysis wg11,
WgRecommendedAstroAnalysis wg14,
SpectrumGroup sgp11,
SpectrumGroup sgp14
WHERE wg11.wg = 'WG11'
AND wg14.wg = 'WG14'
AND wg11.specGroupID = sgp11.specGroupID
AND wg14.specGroupID = sgp14.specGroupID
AND sgp11.specId = sgp14.specId
AND wg11.cName = '00194037-4659596';
Queries on the Atomic and Molecular Line Lists
The GES archive contains a set of atomic and molecular line lists.
Atomic lines both with and without hyperfine
splitting are included. This dataset is described in the
Linelist Report, which also
discusses flags included in the tabulation that can be used to
select suitable lines. These data are used consistently in all
analyses of the GES spectra carried out within the GES Consortium.
All the lines available are listed in table 'LineList', which contains
in excess of 33 million rows, most of them corresponding to molecular
lines. Several views containing useful sub-sets of the line list
data are also provided. In many cases these views are likely to be
more convenient to use than the complete 'LineList' table. The views
available are as follows: (table 'LineList' is included for convenience
and completeness):
View |
Description |
Rows |
LineAtomHfs |
Atomic lines including data for unresolved fine, hyper-fine or isotopic
splitting, if present. |
141,240 |
LineAtomNoHfs |
Atomic lines excluding data for unresolved fine, hyper-fine or isotopic
splitting. |
139,950 |
LineMol |
Molecular lines only. |
35,003,307 |
LineMolAtomHfs |
Molecular lines and atomic lines including data for unresolved fine,
hyper-fine or isotopic splitting, if present. |
35,144,547 |
(LineList) |
The complete set of atomic lines with and without hyperfine splitting and
molecular lines. |
35,284,497 |
The following examples all present queries of view 'LineAtomHfs' (that
is atomic lines with hyperfine splitting). However, all the views, and
table 'LineList' have the same set of columns so the examples can be
applied to any of them by simply substituting the appropriate view or
table name.
Which lines are available in a given wavelength
range?
Column 'lambda' lists the wavelength in
Ångström. Thus, to see all the lines in wavelength
range 4800 to 4810 Å:
SELECT * FROM LineAtomHfs
WHERE lambda BETWEEN 4500 AND 4800
ORDER BY lambda ASC;
Note the inclusion of the 'ORDER BY' clause so that the
lines are listed in order of increasing wavelength.
Which lines are available for a given species?
Column 'name1' lists the element giving rise to
each line and column 'ion' the ionisation state of each species.
Thus, to see all the lines for singly ionised aluminium, ordered by
increasing wavelength:
SELECT * FROM LineAtomHfs
WHERE name1 = 'Al' and ion = 1
ORDER BY lambda ASC;
Which species are available for a given element?
To see a list of the iron species available and the number
of lines included for each species:
SELECT name1, ion, count(ion) FROM LineAtomHfs
WHERE name1 = 'Fe'
GROUP BY name1, ion
ORDER BY name1, ion;
Which lines are available for a given element?
To see all the aluminium lines, for example, (including
all the various ionisation states) ordered by increasing wavelength:
SELECT * FROM LineAtomHfs
WHERE name1 = 'Al'
ORDER BY lambda ASC;
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WFAU, Institute for Astronomy,
Royal Observatory, Blackford Hill
Edinburgh, EH9 3HJ, UK
Tel +44 131 668 8356 (office)
or +44 131 668 8100 (switchboard)
ges-support@roe.ac.uk
11/1/2018
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